ReferenceΒΆ

[1]http://www.itk.org
[2]http://www.vtk.org
[3]http://www.cmake.org
[4]http://www.mccauslandcenter.sc.edu/mricro
[5]http://www.nitrc.org/projects/mrtrix
[6]https://github.com/dgobbi/AIRS
[7]Smith SM. Fast robust automated brain extraction. Human Brain Mapping, 17(3):143-155, 2002.
[8]Cheng J, Jiang T, Deriche R. Nonnegative definite EAP and ODF estimation via a unified multi-shell HARDI reconstruction. Med Image Comput Comput Assist Interv., 15(Pt 2):313-21, 2012.
[9]Tournier JD, Calamante F, Connelly A. Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution. Neuroimage, 35 (4): 1459-1472, 2007.
[10]http://cmictig.cs.ucl.ac.uk/wiki/index.php/NiftyReg
[11]Xie S., Zuo N., Shang L., Song M., Fan L., Jiang T., 2015. How does B-value affect HARDI reconstruction using clinical diffusion MRI data? PLoS One 10, e0120773.
[12]Basser P.J., Mattiello J., LeBihan D., MR diffusion tensor spectroscopy and imaging. Biophysical journal, 1994. 66, 259-267.
[13]Zuo N., Cheng J., Jiang T., 2012. Diffusion magnetic resonance imaging for Brainnetome: A critical review, Neuroscience bulletin, DOI: 10.1007/s12264-012-1245-3.
[14]Wedeen V.J., Hagmann P., Tseng W.Y., Reese T.G., Weisskoff R.M., 2005. Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging. Magn Reson Med, 54(6):1377-1386.
[15]Alexander, A.L., Lee, J.E., Lazar, M., Field, A.S., 2007. Diffusion tensor imaging of the brain. Neurotherapeutics 4, 316-329.
[16]Calamante F., Tournier J.D., Heidemann R.M., Anwander A., Jackson G.D., Connelly A., 2011. Track density imaging (TDI): validation of super resolution property. Neuroimage, 56, 1259-66.
[17]http://trackvis.org
[18]Ourselin S, Stefanescu R, Pennec X. Robust registration of multi-modal images: towards real-time clinical applications. Medical Image Computing and Computer Assisted Intervention. Springer Berlin Heidelberg, 2002: 140-147.
[19]Ourselin S, Roche A, Subsol G, et al. Reconstructing a 3D structure from serial histological section. Image and vision computing, 2001, 19(1): 25-31.
[20]Modat M, Ridgway G R, Taylor Z A, et al. Fast free-form deformation using graphics processing units. Computer methods and programs in biomedicine, 2010, 98(3): 278-284.
[21]Andersson JL, Sotiropoulos SN. An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging. NeuroImage, 2016, 125: 1063-78.
[22]Bernstein MA, King KF, Zhou ZJ. Handbook of MRI pulse sequences. Academic Press: Amsterdam, Boston, 2004.
[23]Andersson JLR, Skare S, Ashburner J. How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging. NeuroImage, 2003; 20: 870-88.
[24]Smith SM, Jenkinson M, Woolrich MW, Beckmann CF, Behrens TEJ, Johansen-Berg H, Bannister PR, De Luca M, Drobnjak I, Flitney DE, Niazy RK, Saunders J, Vickers J, Zhang YY, De Stefano N, Brady JM, Matthews PM. Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 2004; 23: S208-S19