Manual

• Overview
  • Key functions of the software
• Data Processing Pipeline
  • Preprocessing
    • DICOM to NIFTI Conversion
    • Data correction
    • Skull Stripping (Brain Extraction)
  • Reconstruction of the diffusion model
    • DTI Reconstruction
    • SPFI Reconstruction
    • CSD Reconstruction
  • Fiber tracking and attributes extraction
  • Visualization for various images
  • Several other useful tools
    • Image registration
    • Image calculation and ROI generation
    • Fiber manipulation
• GUI Front-end of Data Processing Pipeline
  • Preprocessing
    • DICOM to NIFTI Conversion
    • Eddy Current Correction
    • Skull Stripping
  • Diffusion Model Reconstruction
  • Fiber Tracking
  • Miscellaneous Tools
    • Image Registration
    • Create ROI
    • Fiber Pruning
• Guidelines on Data Visualization
  • Command Line Interface
  • Image Data Navigation
    • 3D Navigation
    • 2D Navigation
  • Background Volume Data Layer
    • Image Contrast Enhancement
    • Volume Image Overlay
    • Volume Rendering
  • Region of Interest (ROI) Layer
  • Fiber Layer
  • Tensor/ODF/FOD Layer
• Data Format
  • Input
  • Output
• Future Improvements
  • TO-DO list
• Reference